2020

Shinkai, S.*, Onami, S., Nakato, R.* (2020) Toward understanding the dynamic state of 3D genome. Computational and Structural Biotechnology Journal 18, 2259–2269. Full Text

Shinkai, S.*, Sugawara, T., Miura, H., Hiratani, I., Onami, S.* (2020) Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization. Biophysical Journal 118, 2220–2228. Full Text

Shinkai, S.*, Nakagawa, M., Sugawara, T., Togashi, Y., Ochiai, H., Nakato, R., Taniguchi, Y., Onami, S.* (2020) PHi-C: deciphering Hi-C data into polymer dynamics. NAR Genomics and Bioinformatics 2(2), lqaa020. Full Text
Press Release (in Japanese)

2019

Ito, H., Sugawara, T., Shinkai, S., Mizukawa, S., Kondo, A., Senda, H., Sawai, K., Ito, K., Suzuki, S., Takaine, M., Yoshida, S., Imamura, H., Kitamura, K., Namba, T., Tate, S., Ueno, M.* (2019) Spindle pole body movement is affected by glucose and ammonium chloride in fission yeast. Biochemical and Biophysical Research Communications 511(4), 820–825. Link

2018

Shinkai, S.* (2018) Polymer modeling of hierarchical chromatin. (in Japanese) Experimental Medicine 36(17), 65–71.

2017

Shinkai, S.*, Nozaki, T., Maeshima, K., Togashi, Y. (2017) Bridging the dynamics and organization of chromatin domains by mathematical modeling. Nucleus 8(4), 353–359. Full Text

Togashi, Y.*, Shinkai, S., Komatsuzaki, T. (2017) Small Numbers and Individuality of Molecules. (in Japanese) Experimental Medicine 35(19), 3190–3196.

2016

Shinkai, S.*, Nozaki, T., Maeshima, K., Togashi, Y. (2016) Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells. PLOS Computational Biology 12(10), e1005136. Full Text
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Press Release (in English)
Press Release (in Japanese)

2015

Shinkai, S.* (2015) Dissipative Heat Decomposition in Stochastic Energetics: Implication of the Instantaneous Diffusion Coefficient in Nonequilibrium Steady States. Journal of the Physical Society of Japan 84, 015001. Full Text

Akimoto, T.*, Nakagawa, M., Shinkai, S., Aizawa, Y. (2015) Generalized Lyapunov exponent as a unified characterization of dynamical instabilities. Physical Review E 91(1), 012926. Link

Akimoto, T.*, Shinkai, S., Aizawa, Y. (2015) Distributional Behavior of Time Averages of Non-L1 Observables in One-dimensional Intermittent Maps with Infinite Invariant Measures. Journal of Statistical Physics 158(2), 476–493. Link

Shinkai, S.* (2015) Analytical theory of individual diffusion trajectories in living cells. Advances in Science, Technology and Environmentology B11, 167–169.

Tamiya, Y.*, Shinkai, S., Aizawa, Y. (2015) Log-Weibull law in Fermi-Pasta-Ulam oscillator chain: Induction time as Nekhoroshev stable time. Advances in Science, Technology and Environmentology B11, 181–183.

2014

Shinkai, S.*, Togashi, Y. (2014) Energetics of single active diffusion trajectories. Europhysics Letters 105(3), 30002. Full Text
Selected in Highlights of 2014

2012

Shinkai, S.*, Aizawa, Y. (2012) 1/f Spectrum and 1-Stable Law in One-Dimensional Intermittent Map with Uniform Invariant Measure and Nekhoroshev Stability. Journal of the Physical Society of Japan 81(2), 024009. Full Text

2008

Shinkai, S.*, Aizawa, Y.(2008) Ergodic properties of the Log-Weibull map with an infinite measure. Let's Face Chaos through Nonlinear Dynamics 219–222.

2007

Shinkai, S.*, Aizawa, Y. (2007) The Lempel-Ziv Complexity in Infinite Ergodic Systems. Journal of the Korean Physical Society 50, 261–266.

2006

Shinkai, S.*, Aizawa, Y. (2006) The Lempel-Ziv complexity of non-stationary chaos in infinite ergodic cases. Progress of Theoretical Physics 116(3), 503–515. Full Text

Shinkai, S.*, Aizawa, Y. (2006) The Lempel-Ziv complexity of 1/f spectral chaos and the infinite ergodic theory. Journal of Physics: Conference Series 31, 213–214. Full Text